Thermodynamics

 
 
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GIBBS FREE ENERGY

A thermodynamic indicator of success

We need to appreciate the principles of thermodynamics to understand how biochemical reactions occur. Section 1 explained how the first two laws of thermodynamics dictate the flow of energy through our universe. But how can we understand biochemical reactions in terms of these laws of energy flow? In the 1800s, a scientist named J. Willard Gibbs described a new value, “free energy,” to helps us to do exactly that. Gibbs Free Energy, denoted by G, describes the energy available to do work within a system, in this case a chemical reaction.

Free Energy can be used to make things occur that wouldn’t happen without a source of energy. Examples of work being done include the progress of a chemical reaction to create a new product, an engine running to turn the wheels of a car, and falling water moving the turbines of a hydroelectric power plant. Keep in mind that Free Energy, which is useful because it can be harnassed to do work, is different from the heat energy that is always lost in any process. This heat energy is generated as the cost of doing work, and is therefore often called nature’s “heat tax.” The Gibbs Free Energy Change, or DG, is the difference between the G of the reactants and the G of the products.

Thus, the Gibbs Free Energy of reaction is the maximum potential usable energy of a system, and is calculated by the following formula:

DG = (energy of products) – (energy of reactants)

 

Energy diagram: The free energy profile of a reaction going from products to reactants.

Here is a reaction diagram that illustrates DG. If the DG is negative, meaning the products are at a lower energy than the reactants, then the reaction is thermodynamically favorable, meaning it can proceed. Remember, the second law of thermodynamics states that a system will always want to move toward a lower energy state. Thus, DG is useful because it tells us if a chemical reaction is likely to proceed in the direction it is written.

However, the DG does not tell us at all how fast this reaction will happen. This is because there is another quantity that is important in the energetics of a chemical reaction. Take another look at the energy diagram (above). Notice that as the reaction proceeds, the reactants actually have to move through a higher energy state before they can arrive at the low energy state of the products. In other words, the reactants have to scale an “energy wall,” called the Energy of Activation ( DG). The higher the DG, the taller the wall. As you might suspect, a taller wall is more difficult to scale, and thus reactions with a high DG proceed slowly. In contrast, reactions with a low DG progress more quickly. Such reactions are said to be kinetically favorable, or likely to proceed rapidly. (For more on biochemical kinetics, see the kinetics review.)

Example 3: Thermodynamic vs. kinetic stability

Blood collected 20 years ago from a crime scene is being used for DNA testing at a murder trial to prove the suspect was indeed at the scene of the crime. The defense lawyer argues that this test cannot be reliable, since she knows that the hydrolysis reaction (breakdown) of DNA has a negative DG. She concludes that therefore the DNA degraded spontaneously after all this time, and is now useless. As an expert witness for the prosecution, how can you use your knowledge of biochemistry to explain why she is mistaken?

Answer

You point out that a negative DG just means the breakdown of DNA is thermodynamically favorable. You clarify this by explaining that the DG value does not say anything about how fast the reaction will occur. In fact, DNA is kinetically stable, and thus the breakdown of DNA happens very slowly, making DNA evidence valid decades after crimes have been commited.

The figure above shows a reaction with a negative DG (the products have less free energy than the reactants). Such an energy-releasing reaction is said to be exergonic. However, some reactions have a positive DG (where products have more free energy than the starting reactants). As you might imagine, such reactions require energy input, and are called endergonic, or energy consuming.

GIBBS FREE ENERGY
Sign of DG Energy Transferred Term Used
Positive DG Consumes free energy
(Requires energy input to proceed)
Endergonic
Negative DG Releases free energy
(No energy input required to proceed)
Exergonic
DG = 0 No free energy transferred
(Does not proceed)

At equilibrium

Keep in mind that energy released in an exergonic reaction is not necessarily released as heat. Thus, an exergonic (energy releasing) reaction is not necessarily exothermic (heat releasing). In other words, a reaction with a negative DG (free energy) value may have either a positive or negative DH (enthalpy) value!